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I prefer Alfred to Ignatius, though Ignatius is also a good name and does make a good middle name to Alfred. I think Alfie is a great nickname but if you don't want a nickname then just keep it as Alfred. I don't think Alfred will ever get fairly common but especially Alfie is a name that is a bit more popular than it used to be.

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I would pair Alfred with Winifred though it is very similar as well as Daphne though it goes with most that you've suggested. Just depends on how similar you want them to sound. Ignatius would work with those siblings as well.